As delta smelt (Hypomesus transpacificus) continue to decline throughout the Sacramento-San Joaquin Delta, with recent population estimates numbering in the low thousands, novel approaches are being implemented to open up additional habitat for these imperiled fish. While many proposed conservation actions focus on habitat restoration, others focus on various environmental conditions preferred by delta smelt. As recommended in the California Natural Resource Agency’s Delta Smelt Resiliency Strategy (CNRA 2016), the Department of Water Resources, in collaboration with other stakeholders, has been conducting a pilot research study to investigate how operational changes at the Suisun Marsh Salinity Control Gates affect delta smelt habitat conditions.

 

For the unfamiliar, the Suisun Marsh is the largest estuarine marsh remaining in the western United States, and tidal fluctuations bring in saline waters into the marsh with the flood tide and freshwater with the ebb tide. The marsh encompasses approximately 100,000 acres and has been drastically altered by decades of farming. Local duck hunting clubs have been working to reverse some of this alteration, although original diking by the clubs to create more freshwater habitat for game birds led to additional fragmentation and subsidence. The majority of the marsh area consists of diked wetlands managed for waterfowl, with the rest composed of tidal sloughs, marsh plain, and grasslands (DWR 2001). The salinity control gates at the heart of the study are situated at the eastern end of Montezuma Slough, one of the largest sloughs in northern Suisun Bay. These gates were originally built to control saltwater that was intruding upstream to prevent it from entering water diversions. The gates create a tidal “pump,” opening on the ebb tide to and closing on the flood tide, thereby inducing a net inflow of approximately 2,800 cfs of low salinity Sacramento River water into Montezuma Slough. Operation of the gates is currently determined by trigger salinities at monitoring stations throughout Suisun Marsh.

 

The pilot study seeks to determine the effectiveness of creating suitable habitat within the marsh during the late summer (i.e., August) and to examine smelt populations and distribution, as well as measure elements vital to smelt habitat such as water quality, flow, and food supply. Typically, in the summer, when the volume of water flowing out of the Delta is low, the marsh becomes saltier and delta smelt are less likely to be found in the habitat. Researchers wanted to know if operating the gates at this time of year to direct fresh water into the marsh would create lower salinity habitat, help delta smelt access better food resources in the marsh, and consequently improve growth and survival. Emphasis was placed on Suisun Marsh as it is key habitat for delta smelt and, depending on the findings of the study, the operation of the control gates could provide an effective tool to manage smelt habitat in periods other than the late summer. Normally, these gates are tidally operated during the control season between October and May and left open between June and September. In addition to fish and water quality monitoring, the study will also use modeling to map and quantify how the action affected the habitat available for smelt.

 

The most recent findings, presented to the Delta Stewardship Council in April 2019, suggest that this action was successful as delta smelt were encountered in the marsh during sampling after the gate operations began. As noted by Dr. Louise Conrad, all the other monitoring conducted suggested that smelt wouldn’t have been present without the gate operation, given previous years documentation. Further, as intended, the influx of freshwater created by the control gates during this period provided access to some brackish habitat that otherwise would have been too salty for smelt. Given these successes during the first year of implementation, the study intends to continue for multiple years.